MANA Events
Find metabolomics-related events hosted by MANA Interest Groups and community members. Everything from research webinars to metabolomics courses!
Events Calendar
Our events are collected from our partners, members, and team.
To post an event that has a metabolomic component, please contact us.
Our Board can offer event support, learn more about how we can help with your event.
EVENT LISTINGS
Bits & Bites #04: Quantification in Metabolomics: Tools for Robustness
Bits & Bites # 04: Quantification in Metabolomics: Tools for Robustness
Hosted by: UC Davis West Coast Metabolomics Center (Davis, CA)
Location: Online
Instructor: Dr. Huaxu Yu, UC Davis
Required Software: None
Participant prerequisites: None
Level: Introductory
Decription: Metabolomics, renowned for its broad, untargeted exploration of metabolites, holds immense value. Yet, targeted metabolomics and precise quantification are equally vital. Professionals across fields like pharmacology and medicine heavily depend on accurate quantification. This short course focuses on classical quantitation within targeted metabolomics, focusing on critical aspects like selectivity, accuracy, and LOD/LOQ. We'll navigate challenges like dealing with adducts and in-source fragmentation. Additionally, we’ll discuss the nuances between targeted and untargeted metabolomics, shedding light on essential concepts such as normalization techniques and what to consider when doing one or the other.
Bits & Bites #05: Using MS-DIAL to generate accurate comprehensive LC-MS/MS metabolomics datasets
Bits & Bites # 05: Using MS-DIAL to generate accurate comprehensive LC-MS/MS metabolomics datasets
Hosted by: UC Davis West Coast Metabolomics Center (Davis, CA)
Location: Online
Instructor: Dr. Jake Folz, ETH Zurich
Required Software: MS-DIAL for Windows. Versions of the tool to be used will be announced closer to the course date.
Participant prerequisites: Basic understanding of LC-MS and understanding of how MS/MS spectra are used in metabolite identification.
Level: Intermediate
Decription: Metabolomics demands meticulous data processing, especially with large complex datasets (i.e., 1000s of samples, different shipping batches, longitudinal studies). Using hands-on examples, we will provide best practices on how to perform fine-tuned curation of LC-MS/MS data generated through MS-DIAL a freely-available data processing tool for untargeted metabolomics data and other tips for quality assessment and reducing unknown features to ensure accuracy.
International Theoretical and Practical Course: "Making Metabolomics Matter: Targeted Approaches for Translational and Precision Medicine"
International Theoretical and Practical Course: "Making Metabolomics Matter: Targeted Approaches for Translational and Precision Medicine"
Dates: July 22-26, 2024
Location: Facultad de Química, Universidad Nacional Autónoma de México (UNAM). Cto. Escola S/N, C.U., Coyoacán, 04510 Ciudad de México, CDMX (In-person)
Eligibility: Students, Postdoctoral Researchers, Researchers from Mexico, Latin America, South America and the Caribbean.
12 Full scholarships available.
Applications must be sent to: yamilelopez@gmail.com
Sponsored by: United Nations University Programme for Biotechnology in Latin America and the Caribbean, TMIC Wishart Node node, A/B SCIEX AB Mexico, Facultad de Química UNAM
International Sessions in Metabolomics & Exposome Studies 2024
International Sessions in Metabolomics & Exposome Studies 2024
How to master biochemical and chemical data from foods, blood, and organs in metabolomics and exposome studies
When: Aug 19 - Aug 29, 2024
Week 1: Aug 19-24 (inc. Saturday for electives, see below)
Week 2: Aug 26-29, 2024
Time: 8 hours per day
Pace: Instructor-led
Language: English
Level: No experience in metabolomics needed. Ideal for participants who receive, acquire or analyze metabolomics data.
Website: https://metabolomics.ucdavis.edu/courses-and-seminars/courses/208-course1
Bits & Bites #06: Using the GNPS for Metabolomics Data Analysis and Visualizations
Bits & Bites #06: Using the GNPS for Metabolomics Data Analysis and Visualizations
Hosted by: UC Davis West Coast Metabolomics Center (Davis, CA)
Location: Online
Instructor: Dr. Mingxun Wang, UC Riverside
Required Software: None
Participant prerequisites: GNPS Account, no programming experience necessary.
Level: Intermediate
Decription: In this short course, we will get familiar with GNPS (Global Natural Products Social Molecular Networking) a web-based mass spectrometry ecosystem, and learn how to look at your data using classical molecular networking. Explore GNPS Tools for MassIVE data navigation, including classical molecular networking, data selection, mastering molecular network workflows, interactive LC/MS visualization, and compound identification. Uncover insights into intricate mass spectrometry data efficiently. Exciting material to be covered with new additions to GNPS, that will be launched in the Wang Lab in 2024.
Bits & Bites #07: Using MetaboAnalyst for Metabolomics Statistics and Data Visualizations
Bits & Bites # 07: Using MetaboAnalyst for Metabolomics Statistics and Data Visualizations
Hosted by: UC Davis West Coast Metabolomics Center (Davis, CA)
Location: Online
Instructor: Dr. Jeff Xia, McGill University
Required Software: Laptop with stable internet connection
Participant prerequisites: Basic knowledge of computer skills. No programming experience is necessary.
Level: Introductory
Decription: In this short course, we will focus on mastering MetaboAnalyst 5.0, the robust platform for statistical analysis in metabolomics. Learn data input, preprocessing, and key analyses like PCA, PLS-DA, and OPLS-DA. Explore functional analysis techniques, biomarker identification, and tackle complex metadata for robust statistical insights in metabolomics data.
Bits & Bites #08: Statistics in R for Metabolomics
Bits & Bites # 08: Statistics in R for Metabolomics
Hosted by: UC Davis West Coast Metabolomics Center (Davis, CA)
Location: Online
Instructor: Dr. Christopher Brydges, SomaLogic & UC Davis
Required Software: R and RStudio (Exact versions to be specified nearer the course date)
Participant prerequisites: Basic knowledge of statistics (i.e., what a t-test is and when to use one)
Level: Intermediate
Decription: In this short course, we will focus on analyzing case/control study data and crafting compelling data visualizations in R. Explore R's core concepts, master data loading, and manipulation including missing data imputation. Learn essential data analysis techniques like univariate vs. multivariate approaches and delve into creating and customizing impactful graphs and plots. Elevate your R skills and transform your data with us!
Bits & Bites #09: Biochemical interpretation and visualization of metabolomics data
Bits & Bites #09: Biochemical interpretation and visualization of metabolomics data
Hosted by: UC Davis West Coast Metabolomics Center (Davis, CA)
Location: Online
Instructor: Dr. Oliver Fiehn, UC Davis
Required Software: None
Participant prerequisites: None
Level: Introductory
Decription: What do you do after you have completed statistics? How do you map and visualize your data? This short course will focus on helping you interpret data, generate hypotheses, integrate biological and metabolomics data, and make the most of freely available online databases. We will provide practical tips on curation, data mapping, and visualization.
Bits & Bites #10: Identification of Unknown compounds in untargeted metabolomics using freely available software
Bits & Bites #10: Identification of unknown compounds in untargeted metabolomics using freely available software
Hosted by: UC Davis West Coast Metabolomics Center (Davis, CA)
Location: Online
Instructor: Dr. Arpana Vaniya, UC Davis
Required Software: Versions of tools to be used will be announced closer to the course date.
MS-FINDER for Windows (http://prime.psc.riken.jp/compms/msfinder/main.html)
SIRIUS+CSI:FingerID for Windows (https://bio.informatik.uni-jena.de/software/sirius/).
MetFrag (https://msbi.ipb-halle.de/MetFrag/)
NIST MS Search 2.3 & Lib2NIST
Participant prerequisites: Basic knowledge of computer skills. No programming experience is necessary.
Level: Introductory
Decription: Where do you start when a multitude of approaches exist to address the challenge of metabolite identification? There are so many options from mass spectral library searches, in silico fragmentation tools, and database searching. We will provide tips on how to explore the landscape of compound identification, leverage in silco fragmentation tools, and gain valuable hands-on experience by using real-world challenges.
Bits & Bites #03: Mass Spectrometry Imaging 101: Sample Preparation
Bits & Bites # 03: Mass Spectrometry Imaging 101: Sample Preparation
Hosted by: UC Davis West Coast Metabolomics Center (Davis, CA)
Location: Online
Instructor: Dr. Elizabeth Neumann, UC Davis
Required Software: None
Participant prerequisites: None
Level: Introductory
Decription: Beginning your mass spectrometry imaging research project starts with mastering sample preparation techniques such as tissue freezing and sectioning, matrix application, data analysis, and data visualization. In this short course, we will provide a comprehensive overview of mass spectrometry imaging, covering sample preparation methods, instrumentation, data analysis techniques, and practical guidance to kick-start your research project.
Hands-on LC-MS Data Processing and Statistics 2024
Hands-on LC-MS Data Processing and Statistics 2024
Hosted by: UC Davis West Coast Metabolomics Center (Davis, CA)
Location: In-Person, ARC UC Davis
Time Commitment: 8 hours per day
Participant prerequisites: None
Level: Intermediate, ideal for participants who acquire metabolomics data and understand data acquisition
Description: This course will provide participants with a comprehensive, hands-on training experience involving the analysis of real-world untargeted metabolomics data.
The course curriculum will encompass a wide range of topics including:
LC-MS Data Processing: Gain proficiency in the processing of LC-MS data, a fundamental step in metabolomics analysis.
Compound Identification: Learn to identify compounds within complex datasets, employing advanced techniques and software.
Statistical Analysis: Master both multivariate and univariate statistical methods to extract meaningful insights from your data.
Pathway Mapping: Explore pathway mapping and enrichment analysis to uncover the biological context of your findings.
Hands-On Exercises: Participate in interactive exercises, assignments, and practical work in small groups, with expert guidance.
Bits & Bites #02: Mass Spectrometry for Metabolomics
Bits & Bites # 02: Mass Spectrometry for Metabolomics
Hosted by: UC Davis West Coast Metabolomics Center (Davis, CA)
Location: Online
Instructor: Dr. Uri Keshet, UC Davis
Required Software: None
Participant prerequisites: None
Level: Introductory
Decription: Mass spectrometry (MS) has a crucial role in metabolomics as it’s one of the most widely used analytical techniques in the field. In this comprehensive yet short course, we will cover various MS systems and models like TOF, QQQ, and Orbitrap, understanding their application in metabolomics. You’ll also learn how to make informed decisions when selecting the right MS instrument, method, and parameters tailored to your research needs. Lastly, you’ll gain practical insights on how to optimize your workflow with tips and tricks for developing high-throughput MS methods, such as a short 5-minute method, designed for practical use in metabolomics research.
Bits & Bites #01: Mastering Lipidomics: From Biology to Advanced Techniques
Bits & Bites # 01: Mastering Lipidomics: From Biology to Advanced Techniques
Hosted by: UC Davis West Coast Metabolomics Center (Davis, CA)
Location: Online
Instructor: Dr. Tong Shen, UC Davis
Required Software: None
Participant prerequisites: None
Level: Introductory
Decription: In this short course, our focus will be on lipidomics, where we'll cover systems-level lipid analysis through practical case studies. We’ll explore mass spectrometry-based lipid analysis, covering advanced separation techniques and emerging technologies. Throughout, we’ll provide best practices for the entire experimental pipeline—from crafting experimental designs and sample extraction to emphasizing the crucial role of quality control. This ensures the reliability and accuracy of your lipidomics research, offering a practical and comprehensive learning experience.
Bits & Bites #09: Metabolomics for Epidemiologists
Bits & Bites #09: Metabolomics for Epidemiologists
Hosted by: WCMC Davis, CA
Location: Online
Description:
This 9-part short course series will feature in-depth topics in untargeted metabolomics. Each short course can be taken individually or you can select multiple Bites. You will gain a deeper insight into current software, methods, and pitfalls. Each session starts promptly at 9 a.m. (Pacific Time) and will take approx. 4 hours. The courses will be conducted in highly interactive manner, with use of freely available software and databases.
The tuition is $175 per Bite except for #5. The tutition for #5 is $350 as it will take approx. 8 hours
Bits & Bites # 08: Tips & Tricks of GC-MS in Metabolomics
Bits & Bites # 08: Tips & Tricks of GC-MS in Metabolomics
Hosted by: WCMC Davis, CA
Location: Online
Description:
This 9-part short course series will feature in-depth topics in untargeted metabolomics. Each short course can be taken individually or you can select multiple Bites. You will gain a deeper insight into current software, methods, and pitfalls. Each session starts promptly at 9 a.m. (Pacific Time) and will take approx. 4 hours. The courses will be conducted in highly interactive manner, with use of freely available software and databases.
The tuition is $175 per Bite except for #5. The tutition for #5 is $350 as it will take approx. 8 hours
Bits & Bites # 07: Introduction to Metaboanalyst
Bits & Bites # 07: Introduction to Metaboanalyst
Hosted by: WCMC Davis, CA
Location: Online
Description:
This 9-part short course series will feature in-depth topics in untargeted metabolomics. Each short course can be taken individually or you can select multiple Bites. You will gain a deeper insight into current software, methods, and pitfalls. Each session starts promptly at 9 a.m. (Pacific Time) and will take approx. 4 hours. The courses will be conducted in highly interactive manner, with use of freely available software and databases.
The tuition is $175 per Bite except for #5. The tutition for #5 is $350 as it will take approx. 8 hours
Bits & Bites # 06: Mass Spectrometry for Metabolomics
Bits & Bites # 06: Mass Spectrometry for Metabolomics
Hosted by: WCMC Davis, CA
Location: Online
Description:
This 9-part short course series will feature in-depth topics in untargeted metabolomics. Each short course can be taken individually or you can select multiple Bites. You will gain a deeper insight into current software, methods, and pitfalls. Each session starts promptly at 9 a.m. (Pacific Time) and will take approx. 4 hours. The courses will be conducted in highly interactive manner, with use of freely available software and databases.
The tuition is $175 per Bite except for #5. The tutition for #5 is $350 as it will take approx. 8 hours
Bits& Bites # 05: Identification of unknown compounds in untargeted metabolomics using freely available software
Bits& Bites # 05: Identification of unknown compounds in untargeted metabolomics using freely available software
Hosted by: WCMC Davis, CA
Location: Online
Description:
This 9-part short course series will feature in-depth topics in untargeted metabolomics. Each short course can be taken individually or you can select multiple Bites. You will gain a deeper insight into current software, methods, and pitfalls. Each session starts promptly at 9 a.m. (Pacific Time) and will take approx. 4 hours. The courses will be conducted in highly interactive manner, with use of freely available software and databases.
The tuition is $175 per Bite except for #5. The tutition for #5 is $350 as it will take approx. 8 hours
International Summer Sessions in Metabolomics
International Summer Sessions in Metabolomics
Bits & Bites # 04: Using MS-DIAL to generate accurate comprehensive LC-MS/MS metabolomics datasets
Bits & Bites # 04: Using MS-DIAL to generate accurate comprehensive LC-MS/MS metabolomics datasets
Hosted by: WCMC Davis, CA
Location: Online
Description:
This 9-part short course series will feature in-depth topics in untargeted metabolomics. Each short course can be taken individually or you can select multiple Bites. You will gain a deeper insight into current software, methods, and pitfalls. Each session starts promptly at 9 a.m. (Pacific Time) and will take approx. 4 hours. The courses will be conducted in highly interactive manner, with use of freely available software and databases.
The tuition is $175 per Bite except for #5. The tutition for #5 is $350 as it will take approx. 8 hours
Virtual Metabolomics Journal Club (VMJC) Spring 2023 - Meeting #5
Virtual Metabolomics Journal Club (VMJC) Spring 2023 - Meeting #5
Contact Karen Howard for the Zoom link (khoward@uga.edu)
April 12, 2023
Thanks to our Corporate Members
