Metabolomics Tutorials

 

 

Why using metabolomics? SECIM (U Florida) Arthur Edison
Why using metabolomics? U Alabama Steven Barnes
     

Sample collection and preparation

   
Study design SECIM (U Florida) Lauren McIntyre
Experimental design and sample collection MRC2 (U Michigan) Anna Mathew
Study design and sample collection MRC2 (U Michigan) Chuck Burant
Methods of anaesthesia MRC2 (U Michigan) Charles Evans
Liquid cell culture sample collection MRC2 (U Michigan) (scripted)
Cell culture rinsing and quenching MRC2 (U Michigan) (scripted)
Plated cell culture extractions MRC2 (U Michigan) (scripted)
Mammalian tissue extractions MRC2 (U Michigan) (scripted)
Sample preparation MRC2 (U Michigan) Li Zhang
Sample preparation MRC2 (U Michigan) Kelli Sas
Sample preparation (incl body fluids) SECIM (U Florida) Alisha Roberts, T. Garrett
     

Data acquisition

   
Which platform to choose? U Alabama Steven Barnes
LC-MS and GC-MS SECIM (U Florida) Jean-Luc Wolfender
Isotope Outlier Ratio Analysis SECIM (U Florida) Chris Beecher
NMR SECIM (U Florida) Arthur Edison
Tissue imaging SECIM (U Florida) Rick Yost
     

Data processing

   
MS-DIAL introduction UC Davis Ivana Blazenovic
XCMS introduction Scripps @ U Alabama Xiuxia Du
MS-FINDER and SIRIUS for element formulas UC Davis Arpana Vaniya
Identification of unkowns with MS-FINDER UC Davis Arpana Vaniya
     

Statistics and data interpretation

   
Background in statistical methods U Edmonton (Alberta) Jeff Xia
Tools and databases MRC2 (U Michigan) Alla Karnovsky
Multiple hypothesis testing MRC2 (U Michigan) George Michailidis
Data integration MRC2 (U Michigan) George Michailidis
Enrichment analysis MRC2 (U Michigan) Alla Karnovsky
Using Galaxy for data visualization SECIM (U Florida) Sergio Tafur
Using MetaboAnalyst for pathways U Alabama Steven Barnes
MetaboAnalyst U Edmonton (Alberta) David Wishart
Using ChemRich as alternative to MetaboAnalyst UC Davis Dinesh Barupal